Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015831266.1_cds_XP_016504457.1_17900
CDS Infomation

[gene=LOC107822427] [db_xref=GeneID:107822427] [protein=crossover junction endonuclease EME1B-like isoform X4] [protein_id=XP_016504457.1] [location=join(15145..15268,17214..17369,17485..17588,19284..19466,19546..19699,19792..19901,20952..21127,22240..22303,22422..22540,24599..24688,26761..26875,27610..27777)] [gbkey=CDS]
Sequence

ATGGTTGCTGAAACACCGGCATCAGAGCTTTCAAAGTATAGTGTCCCCATAGTCAGATGT
ACTAAAGCTATTACTGTTTCACAGAATTGCTCTTCGTCAACTTTAGACCACAAAAATGAT
GGCGGAATTGATGGACTAATTTGTTTGGAGTCTGATAATGAATCTGAGGATAGTGGTAAG
CTTGTTTCCTGGAATGAGGAGGAGAAAGTTTGTTCCACTAAGGCAATTGTAAAGGAGACA
GAATTGAGCTCCAGACCTTTTAAGTCCACAATTTCTCTTGGTTATACAACTGAGACGAAA
AACTGTCGAACAGTTAATGACAATTTTATGCTCACGGCAGAGGATGTTTCTCATCGATAT
TTGGTTGAAGCTGGTCCTTCTCTGGACCATGGTCATCCTGACGACGAAAGTGATATTTTG
GAGTTAAACGATGACATCTCAAGACCGAGAGGTAAAGGCAAAGGCAAGAAAAGTAACAGA
AGCAGTGTAGATGAAGTAACAGGGAAAACGAGGATGTCAAAGGATGAACGCTTTCGCCTA
AATGAAGAAAAGAAGCAGCAGAAAGAGCGAGAGAAATTGCAAAAGGCGGCCCAGAAGGCT
GAAGCTGCAGAGATAAAAAAGCGAGAAAAGGAAAAGGAAAAGTGGGAAAAGGGAAAGTTT
GCCCTTAAGTCTATTGTAGCTCACATTGACACCAAAGTTGTGGAACTAGGATCGATCGGA
GGTCATTTGCTATCAAGGCTTGCGGAAAAAGGTCTTTCCTTCCGAGTTTCATCAAATCCA
ATTGAAAAGTCTATTGTGTGGTCAATGAGTGTTCCGGAGGAAATATCGAAGATTTCATCA
GAAGTTATCAAAGTTCCATATATATTAATCATATGTGAGGCCGAGGAGTTTTGCGACCTC
GTGAATAGCGAATCATTGATGAGTCATGTTTCCCGTGTTCAACGCCTTTATCCTCTTCAT
ACAGTCTGTTATCTCACAAACAAGCTAATGGCATACATCAACAAAAGGGAACAAGGTCAA
TACAAGGACCCTGCCAATCATATTGGTTGGAAACGGCCACCTATAGAGGAGGTTCTATCC
AAGTTAACAATTAATTTCGTTAAGGTGCATTCAAGACATTGTGTTGATGAAGCTGAATTA
GCTGAACATGTAGCTGGGCTGACTTACAGCTTAGCTTCTTGTCAGTTTAGAAACAAATTA
ACAAGACTATCTGTCAATGCAAATGGTTCTCTTATTCCCAAGAGTTGCGTTGACAAGGAC
ATGATAAAAAAAAGCCCCTGGTTGAAAGCATTGGTGGCTATTCCAAAGGTTCAGCCTCGA
TTTGCCATTGCCATATGGAAGAAATATCCCACAATGAAATCTCTTTTGCATGTTTACATG
GATCCAAGTAAATCGGTACATGAGAAAGAATTTCTGCTGAAAGATTTGAAAGTCGAAAAC
ATGTTGGGTGATGATAGAAAATTGGGAGAGATCTGTTCAAGGAGAGTATACAGAATATTG
ATGGCTCAATCTGGAAGCATCAAGACAGATGACATTGAAAAAGGAGCCGATTTCTTCAGC
TAG

Peptide Sequence

PEP ID

XP_016504457.1
PEP Infomation

PREDICTED: crossover junction endonuclease EME1B-like isoform X4 [Nicotiana tabacum]
Sequence

MVAETPASELSKYSVPIVRCTKAITVSQNCSSSTLDHKNDGGIDGLICLESDNESEDSGK
LVSWNEEEKVCSTKAIVKETELSSRPFKSTISLGYTTETKNCRTVNDNFMLTAEDVSHRY
LVEAGPSLDHGHPDDESDILELNDDISRPRGKGKGKKSNRSSVDEVTGKTRMSKDERFRL
NEEKKQQKEREKLQKAAQKAEAAEIKKREKEKEKWEKGKFALKSIVAHIDTKVVELGSIG
GHLLSRLAEKGLSFRVSSNPIEKSIVWSMSVPEEISKISSEVIKVPYILIICEAEEFCDL
VNSESLMSHVSRVQRLYPLHTVCYLTNKLMAYINKREQGQYKDPANHIGWKRPPIEEVLS
KLTINFVKVHSRHCVDEAELAEHVAGLTYSLASCQFRNKLTRLSVNANGSLIPKSCVDKD
MIKKSPWLKALVAIPKVQPRFAIAIWKKYPTMKSLLHVYMDPSKSVHEKEFLLKDLKVEN
MLGDDRKLGEICSRRVYRILMAQSGSIKTDDIEKGADFFS

Transcript Sequence

Gene sequence data has not been registered.